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About

Viral / Molecular High Density Sequencing Core


Welcome to the Viral / Molecular High Density Sequencing Core at the University of Pennsylvania.

We offer both Illumina sequencing and bioinformatic expertise to assist researchers with gene therapy trial evaluations,
viral integration profiling, CRISPR off-target analyses, as well as bioinformatic analyses including RNAseq transcription  
profiling and 16S taxonomic assignments. Services are available à la carte or as complete service packages.

These services are offered by the laboratory of Dr. Frederic Bushman in the Microbiology Department and as part
of the CFAR consortium at PENN.

 

Please visit our core website for more information. FAQ can be found here. 


Please contact Aoife Doto to see how we can assist you with your project: rochea@pennmedicine.upenn.edu

 

Example analysis reports: 
Gene therapy subject report
CRISPR off-target analysis report

Research Resource Identifier

Our RRID is RRID:SCR_022433.  Please cite us using this identifier when publishing your results.

Contacts

Name Role Phone Email Location
Aoife Doto, PhD
Technical Director
 
215-573-8733
 
rochea@pennmedicine.upenn.edu
 
425 Johnson Pavilion
 
John Everett, PhD
Bioinformatic Director
 
215-573-8733
 
everj@pennmedicine.upenn.edu
 
425 Johnson Pavilion
 
Frederic Bushman, PhD
Principle Investigator
 
215-573-8733
 
bushman@pennmedicine.upenn.edu
 
425 Johnson Pavilion
 
James Burns
Business Manager
 

 
james.burns@pennmedicine.upenn.edu
 

 

Map




425 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104